Best Practices Session · DeveloperWeek New York · AI DevSummit · June 9, 2026

From Chaos to Control: Managing AI Agents at Scale with Agent 365

The Agent 365 Control Plane

Identity, security, and observability for AI agents, at enterprise scale.

Kranthi Kumar Manchikanti AI Architect · Microsoft · Editor, The AI Runtime

Agent 365 · Generally available May 2026

The shift

Agents are no longer coming. They're already here.

1.3B
agents in enterprises by 2028
Directional. IDC projection.
  • They span everything

    Copilot, Teams, and M365, plus local assistants and SaaS agents on emerging platforms.

  • They act, not just chat

    Invoke tools, access data, and talk to other agents. Decisions happen in seconds.

  • They multiply fast

    Easier to build and deploy means your attack surface grows with every new agent.

The problem

Without a control plane, agents become...

  • Invisible

    No inventory, no owner. Shadow and ownerless agents run outside the view of the teams accountable for risk.

  • Insecure

    Over-privileged access, tool misuse, and prompt injection turn a "helpful" workflow into data oversharing in seconds.

  • Unmanaged

    Built across many tools and frameworks with no consistent policy, lifecycle, or audit trail.

You can't govern what you can't see, and you can't secure what you don't understand.

The answer

Agent 365: the control plane for AI agents

Observe, govern, and secure every agent (Microsoft-built, open-source, or third-party) using the admin and security workflows your teams already run.

  • 01

    Observe

    One inventory of every agent: telemetry, dashboards, and an agent map across the whole fleet.

  • 02

    Govern

    Identity, least-privilege access, policy templates, and full lifecycle. Manage agents like your workforce.

  • 03

    Secure

    Runtime threat detection, prompt-injection defense, DLP, and compliance built in.

Architecture

Built on the systems that already run your enterprise

Your agents (Copilot, Teams, open-source, SaaS, custom) sit on top. The control plane handles Registry · Access Control · Visualization · Interoperability · Security. The four Microsoft services below are the trust fabric.

  • Microsoft Entra

    Agent ID, the identity and access-control foundation.

  • Microsoft Defender

    Threat detection, runtime protection, shadow-AI discovery.

  • Microsoft Purview

    Data security and compliance: DLP, sensitivity labels, eDiscovery.

  • Intune + Windows 365

    Device discovery and a secured, managed runtime.

No new trust fabric to rebuild. The same identity, security, and compliance stack, now covering agents.

The control plane

Five capabilities that make enterprise-scale agents possible

  • 01

    Registry

    Stop sprawl at the source: one inventory of every agent.

    What it does

    Single source of truth across Entra Agent ID, Teams Store, and discovered shadow agents. Defender + Intune find local and cloud agents on the Shadow AI page. Unsanctioned agents are quarantined on day one. Registry sync extends to AWS Bedrock and Google Cloud (preview).

    What we learned

    Make discovery continuous, not a one-time audit. Require an owner at registration; a registry without owners is just a list. Quarantine the unsanctioned first, then onboard the rest under policy.

  • 02

    Access Control

    Every agent gets a unique identity, and only the access it needs.

    What it does

    Unique Agent ID per agent (no shared service accounts). Least privilege by default: scope access to the task, shrink the blast radius. Policy templates enforce a baseline at onboarding. Adaptive Conditional Access via Entra applies risk-based policy in real time and blocks compromised agents.

    What we learned

    One Agent ID per agent, scoped tightly to its task. Enforce the baseline with policy templates at onboarding, not later. Let Conditional Access revoke access automatically on risk signals.

  • 03

    Visualization

    Move from monitoring to actionable insight across the fleet.

    What it does

    An Agent Map of every connection among agents, users, and resources. Telemetry and alerts with anomaly detection so blind spots do not become incidents. Role-based reporting: IT, security, and business leaders each see the metrics that matter. Per-agent performance plus logging and eDiscovery to stay audit-ready.

    What we learned

    Define alerts and ROI metrics before go-live, not after. Use the Agent Map to trace every agent-to-data path. Give IT, security, and business their own role-based views.

  • 04

    Interoperability

    Agents get the same context as the people they work alongside.

    What it does

    Native M365 access (Word, Excel, SharePoint, Dynamics 365), the same data your users touch. Framework-agnostic: Microsoft, open-source, and third-party agents are first-class. Secure agent-to-agent interop without bespoke plumbing. Three operating modes: delegated and behind-the-scenes are GA; team workflows in preview.

    What we learned

    Grant task-scoped access through the Agent ID, never standing broad rights. Treat interop as a privilege to scope, not a door to leave open. Make OSS and third-party agents first-class, but governed.

  • 05

    Security

    Defense in depth, from runtime behavior to the data agents touch.

    What it does

    Defender XDR detects threats and protects agents as they execute. Network-level protection stops prompt injection before it reaches the agent. Purview DSPM for AI, DLP, and sensitivity labels guard against oversharing. Insider risk and audit: detect, retain, and investigate risky agent interactions.

    What we learned

    Layer runtime + network + data controls. One guardrail is not enough. Assume the agent is a target and plan blast-radius containment. Use Purview DSPM/DLP to catch oversharing before it ships.

Best practices

Patterns for safely scaling agent-based solutions

  • 01

    Manage agents like a workforce

    Onboard, assign an owner, and offboard. No ownerless agents.

  • 02

    Identity-first, least privilege

    A unique Agent ID per agent, scoped to its task. Templates enforce the baseline.

  • 03

    Discover before you govern

    Switch on shadow-AI discovery early. Quarantine, then bring the rest under policy.

  • 04

    Instrument for observability

    Define alerts and ROI metrics at launch. Watch agent-to-resource paths.

  • 05

    Layer your defenses

    Runtime + network + data controls together. Assume compromise.

  • 06

    Reuse the trust fabric

    Extend Entra, Defender, and Purview. Do not rebuild governance.

Adoption roadmap

From where you are to enterprise AI at scale

  • 01

    Crawl

    Discover & inventory

    • Enable registry + shadow-AI discovery
    • Baseline every agent and its owner
    • Quarantine the unsanctioned
  • 02

    Walk

    Govern

    • Apply policy templates and least privilege
    • Adaptive Conditional Access via Entra
    • Stand up dashboards and alerts
  • 03

    Run

    Secure & scale

    • Runtime + prompt-injection defense
    • Purview DLP, labels, and eDiscovery
    • Measure ROI; sync multi-cloud agents
In production

Customer stories

Two enterprise rollouts of Agent 365 from the live deck. Both sourced from Microsoft customer stories published at Microsoft Ignite 2025.

  • Biotechnology & R&D Amgen

    From concept to a governed R&D agent in just six weeks.

    The challenge
    Speed up drug research without adding new governance or security risk.
    The agent
    An R&D agent that mines research data and drafts scientific insights.
    Governed by Agent 365
    A unique Entra Agent ID, least-privilege access, and full auditability.
    6 weeks
    From idea to a production-ready, governed agent.
    • Built with Microsoft Copilot Studio
    • Observed and secured end-to-end in Agent 365

    Source: Microsoft customer stories · Microsoft Ignite 2025

  • Materials Science Dow

    Reimagining productivity and supply chain with a fleet of agents.

    The challenge
    Scale agents across global operations without losing oversight.
    The agent
    Productivity and supply-chain agents working alongside employees.
    Governed by Agent 365
    One control plane to observe, secure, and measure the whole fleet.
    Millions
    In targeted cost savings across global productivity and supply chain.
    • Powered by Microsoft 365 Copilot and agents
    • Every agent carries a governed identity

    Source: Microsoft customer stories · Microsoft Ignite 2025

Takeaways

If you remember three things

  • 01

    Visibility is the prerequisite

    You cannot govern or secure what you cannot see. Start with discovery and a single registry.

  • 02

    Identity is the control point

    A unique Agent ID with least-privilege access turns ungoverned agents into managed ones.

  • 03

    Extend, don't rebuild

    Agent 365 brings agents into Entra, Defender, and Purview, the trust fabric you already run.

Go deeper

Where to read more

  • aka.ms/Agent365

    The official Agent 365 home: product, docs, and roadmap.

  • Agent Governance Whitepaper

    Microsoft's published guidance on operating agents at enterprise scale. Linked from aka.ms/Agent365.

  • This deck (PDF)

    The 17-slide deck from the session, with capability breakdowns and the customer stories.

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